Version 3.6 Updated June 30, 2009 Links checked 7/21/00
Contents:This list is selected to provide veterinary students and practitioners useful epidemiology, evidence-based medicine and biostatistics resources on the Web. The emphasis is on academic materials or those materials useful in an academic setting and, due to my interests, likely biased toward agricultural animals. This is not by any means an exhaustive list and some gems are likely missing! Absence of gems is an oversight on my part. To increase the utility of this list in the printed form, the major URLs are not hidden. If you find useful sites that I should consider listing, find any that I should remove from this list or find broken links, please let me know. Please note that I have not made other than a brief, cursory scan of the contents of some of these sites to determine if it appeared sufficiently interesting to warrant including in this list.
Websites:
- CIDRAP: U Minn Center for Infectious Disease Research & Policy
- ProMed-mail
- Supercourse: Epidemiology, the Internet and Global Health
Blogs: (blogs often have "blogrolls" linking other blogs the author follows)
- Effect Measure: A forum for progressive public health discussion and argument
- Global Health Ideas
- Global Health Report
- Global Health Policy (Center for Global Development)
- Respectful Insolence: The miscellaneous ramblings of a surgeon/scientist on medicine, quackery, science, pseudoscience, history, and pseudohistory
- Statistical Modeling, Causal Inference, and Social Science
- The Pump Handle: A water cooler for the public health crowd
Wiki:
Other:
- PLOS: Public Library of Science (open resource scientific and medical literature)
YES: Young Epidemiology Scholars Competition
- What is Epidemiology?
- Glossary
- Intellectual Framework of Epidemiology
- Teaching Units
Major Items:
A Short Introduction to Epidemiology, 2nd ed. pdf N Pearce, Massey University, New Zealand, 153 pgs., ISBN 0-476-01236-8, 2005
An Introduction to Veterinary Epidemiology, pdf M Stevenson, Massey University, New Zealand, 90 pgs., 2005
Epidemiology for the Uninitiated, 4th ed. TOC D. Coggon, G. Rose, DJP Barker. British Medical Journal, 1997
Contents:
How to Read a Paper: The Basics of Evidence Based Medicine. T. Greenhalgh, ed. ISBN 0 7279 1139 2, 184 pp, 1997.
Chapters Selected by BMJ:
HyperStat Online Textbook
STATS - STeve's Attempt to Teach Statistics ("Professor Mean" Steve Simon - research biostatistician, Children's Mercy Hospital)
SticiGui Text: Table of Contents (PB Stark, Dept. Statistics, UC Berkeley) Statistics means never having to say you're certain.
Basic statistics for clinicians (CMAJ - JAMC)
(Guyatt et al. CMAJ 1995;152:27-32)BMJ Statistical Notes (list - Duke U Medical Center Library)
Concepts and Applications of Inferential Statistics (R. Lowry, Vassar - on-line text)
History of Epidemiologic Methods
Principles of Epidemiology - CDC Self-study course SS3030
Principles of Epidemiology: An introduction to applied epidemiology, 2nd ed. (527 pg pdf Text - CDC self-study course)
Lesson 6: Investigating an Outbreak (78 pg pdf)
Statistics at Square One, 9th ed. TOC TDV Swinscow, Revised by MJ Campbell, 1997, BMJ Publishing Group
- Data display and summary
- Mean and standard deviation
- Populations and samples
- Statements of probability and confidence intervals
- Differences between means: type I and type II errors and power
- Differences between percentages and paired alternatives
- The t tests
- The chi-squared tests
- Exact probability test
- Rank score tests
- Correlation and regression
- Survival analysis
- Study design and choosing a statistical test
Further Statistics in Dentistry
StudentBMJ - Evidence based medicine
Studying Populations: A Computer Assisted Learning Package for Basic Epidemiological Methods (CD-based, downloadable)
Supercourse: Epidemiology, the Internet and Global Health (on-line epidemiology lectures, RE LaPorte, U Pittsburgh, director)
The Little Handbook of Statistical Practice (GE Dallal, Tufts U)
Understanding the fundamentals of epidemiology: an evolving text. VJ Schoenbach, WD Rosamond, U North Carolina, 2000.
Veterinary Epidemiology - An Introduction (D Pfieiffer Univ London, 2002, 62 page pdf)
(note-this Acrobat PDF file is sized for A4 paper. To print on US 8.5 x 11, select "Shrink to Fit" on the "Print" menu. Otherwise, margin printing will be obscured and printer memory overflow may occur.)
Veterinary epidemiology and economics in Africa - A manual for use in the design and appraisal of livestock health policy, 2nd ed. TOC, SNH. Putt, APM. Shaw, AJ Woods, L Tyler, AD James, ISBN 92-9053-076-6, 1989
My Materials:
Alphabetical Items:
Australian Veterinary Health Services Epidemiological Resources
Guides to active surveillance techniques for developed and developing countries by Angus Cameron.
(note-this Acrobat PDF file is likely sized for A4 paper. To print on US 8.5 x 11, select "Shrink to Fit" on the "Print" menu. Otherwise, margin printing will be obscured and printer memory overflow may occur.)
A Dictionary of Epidemiology (short definitions - Univ Oxford Epidemiology shortcourse)
A Dictionary of (Ecological) Epidemiology (J Swinton, Univ of Cambridge)
An Introduction to Information Mastery (on-line tutorial, MH Ebell, Michigan State U)
Categorical Data Analysis with Graphics (Michael Friendly, York Univ.)
CDC Glossaries:
Clinical Research Training Programs - AAMC
Data Analysis With Epi Info (B Gerstman, San Jose State U)
Electronic Statistics Textbook - StatSoft (based on Stastica and complete, downloadable for quick access (4.7 Mb))
epidemiolog.net (VJ Schoenbach, U North Carolina School of Public Health)
Epidemiology and Prevention of Vaccine-Preventable Diseases - The CDC Pink Book - pdf files
EPIET - European Programme for Intervention Epidemiology Training
Exploring Data (curriculum support materials for introductory statistics)
Gerstman, B. Brian - San Jose State U
Guidelines for Investigating Clusters of Health Events (CDC)
Handbook of Medical Informatics (J.H. van Bemmel, Erasmus University, Rotterdam, M.A. Musen, Stanford University, Stanford)
Introductory Statistics: Concepts, Models, and Applications (busness statistics version) WWW Version 1.0 DW Stockburger, Southwest Missouri State University (on-line textbook)
PROPHET StatGuide: Expanded List of Topics
Rice Virtual Lab in Statistics (DM Lane)
STEPS - STatistical Education through Problem Solving: Biology Modules (downloadable modules for statistics training)
SticiGui: Statistics Tools for Internet and Classroom Instruction with a Graphical User Interface (P Stark, UC Berkeley)
Supercourse: Epidemiology, the Internet and Global Health (Professor Ronald E LaPorte, University of Pittsburgh)
SurfStat Australia
Macnaughton, Don - MatStat Research Consulting Inc
WEB Center for Social Research Methods - WMK Trochim, Cornell
WHO
The Little Handbook of Statistical Practice (G Dallal, Tufts)
Understanding the Fundamentals of Epidemiology: An Evolving Text (18 chapters as PDF files - V. Schoenbach, U North Carolina) - TOC pdf
Course Materials:
- Compartmental Model Analysis of Epidemiologic Processes (JS Koopman U Mich Epidemiology 802)
- Employing Self-Directed Computer and Printed Resources to Reform a Medical School Epidemiology and Biostatistics Curriculum
- Epidemiology Kept Simple (book website - B. Burt Gerstman, San Jose State U)
- Research Design Explained (lectures for research design in psychology)
- Emerging Objectives and Methods in Epidemiology, James S. Koopman MD MPH
- (http://sparc20.medctr.luc.edu/students/II9596/ down?)
- Investigating an Outbreak: Pharyngitis in Louisiana, 3050-G (CDC)
- WWW RESOURCES FOR TEACHING STATISTICS (Robin H. Lock, St. Lawrence University)
- Web Pages that Perform Statistical Calculations! (John C. Pezzullo, Biostatistics, Georgetown University)
Other Stuff:
Chance Database (materials for an introductory probability course)
Pathobiology 640 Introduction to Conservation Medicine and Ecosystem Health (U Ill)
- Conservation Medicine: Ecological Health in Practice Amazon
- Ecosystem Health: Principles and Practice Amazon
- Ecosystem Change and Public Health: A Global Perspective Amazon
Mission Critical (D. Mesher, San Jose State University - on-line tutorial in critical thinking and reasoning)
Epidemiology & Evidence-Based Medicine Center Web-sites:
American College of Epidemiology
American College of Veterinary Preventive Medicine
ASPH - Association of Schools of Public Health
- Systems Thinking workgroup
- 2007 Summer Programs
Australian College of Veterinary Scientists
- Membership Exams - Subject Guidelines
- Fellowship Exams - Subject Guidelines
- Preparing for Membership Exams in Epidemiology: A study guide for groups, 2006 (html, pdf)
BEME Collaboration - Best Evidence Medical Education
BestBETs - Best Evidence Topics - Evidence-based medicine at its best
Campbell Collaboration - Systematic reviews of C2 Social, Psychological, Education, and Criminological Trials Registry (C2-SPECTR), and the C2 Reviews of Interventions, and Policy Evaluations (C2-RIPE).
CEBM - Centre for Evidence-Based Medicine (Oxford)
Centre for Health Evidence - University of Alberta (Formerly EBM: Bridging Evidence to Practice (McMaster University - The Origin of EBM) "know what to do, do what is known, understand what is done"
- Evidence-Based Medicine: A New Approach to Teaching the Practice of Medicine (JAMA 268(17):2420-5, 1992 html)
- Users' Guides to Evidence-Based Practice
Center for Infectious Diseases & Emergency Readiness - UC Berkeley School of Public Health
- Materials
- Conducting an Outbreak Investigation in 7 Steps (or less) - slide pdf handout pdf note pdf
- I left my heart (and more) in San Francisco - student pdf instructor pdf
CONSORT - Consolidated Standards of Reporting Trials
EBDM - Evidence Based Decision Making (USC Health Sciences)
ebm:
- Grading quality of evidence and strength of recommendations, 2004 BMJ 328:1490
- Levels of Evidence and Grades of Recommendations, 2006 - U Minn pdf
- Levels of Evidence and Grades of Recommendations, <2005 - JG Wright pdf
EBVMA - Evidence-based Veterinary Medicine Association
Electronic Public Health (Links - Institute of Health Sciences, Oxford)
epidemiolog.net (an evolving text web site - V. Schoenbach)
epidemiology history:
Sir Bradford Hill
- The Bradford Hill considerations on causality: a counterfactual perspective (Emerging Themes in Epidemiology 2:11, 2005 html)
- The Environment and Disease: Association or Causation? (Proc Royal Soc Med 58 (1965), 295-300 html)
- The missed lessons of Sir Austin Bradford Hill (Epidemiologic Perspectives & Innovations 2004, 1:3 html)
Hippocrates:
- Wikipedia entry
- Works by Hippocrates (English translations)
John Snow:
EpiVetNet Home Page (Dirk Pfeiffer, Massey University, New Zealand - Nice site)
Evidence Based Decision Making (GS Doig, U Sydney)
Evidence-Based Medicine (journal - BMJ)
Evidence Based Medicine - Clarian eLearning Experience, Methodist Emergency Medical and Trauma Center
- What is Evidence-Based Medicine? (2000, WH Cordell, CD Chisholm, pdf)
Evidence-Based Practice ((links to resources - U Washington Health Sci Library)
Evidence-based Medicine Resource Center - New York Academy of Medicine, Evidence-based Medicine Committee, American College of Physicians, New York Chapter
factbites - evidence-based medicine
FOCUS on Field Epidemiology (North Carolina Center for Public Health Preparedness)
FOCUS Issues
I.D.W.L Infectious Disease Weblink: An Infectious Disease Specialty Supersite (links)
Introduction to Evidence-Based Medicine (on-line tutorial, Duke University, University of North Carolina)
ISI Histcite Bibliographic Analysis - Eugene Garfield - Evidence-based Medicine 92-04
Johns Hopkins Bloomberg School of Public Health
- Fundamentals of Epidemiology (course materials on-line)
KDnuggets (Data mining website - links to on-line resources)
Medical Geography - The Geography Site
mathepi.com - Mathematical Epidemiology
National Guideline Clearinghouse
Netting the Evidence: A ScHARR Introduction to Evidence Based Practice on the Internet (Andrew Booth - huge list)
- What proportion of healthcare is evidence based? Resource Guide.
- Core Library for Evidence Based Practice
NHS Centre for Reviews and Dissemination (Univ. York)
- CRD Report 4: Undertaking Systematic Reviews of Research on Effectiveness
RCVS Wellcome Library
- Evidence-based practice in the veterinary profession (revised from Veterinary Times, 34 (5), 16 February 2004 html)
- Evidence-based veterinary medicine resources - list (Andrew Booth, Tom Roper)
RATL - Risk Analysis Teaching and Learning Home Page - David M. Hassenzahl, U Nevada Las Vegas
Society for Medical Decision Making
The Cochrane Collaboration (Preparing, maintaining and promoting the accessibility of systematic reviews of the effects of health care interventions)
- Cochrane Reviewer's Handbook
- InformedHealthOnline (consumer review summaries)
- Review production resources
- Useful Links
The Wisdom Center (registration required - online informatics courses, reference materials)
- Evidence Based Practice - index
- Wisdom Library Catalogue (A resource for primary care professionals to support lifelong learning, continuing professional development and evidence-based practice)
TripDatabase (evidence-based medical resources - Jon Brassey and Dr Chris Price)
University of Washington Health Links
- Evidence-based Practice (Dr. Matt Hollon)
Wikipedia
- Category - Medical Informatics
- Category - Epidemiology
On-line texts:
- A New View of Statistics (WG Hopkins, SportScience)
- The Little Handbook of Statistical Practice (GE Dallal, Tufts)
- HyperStat Online Statistics Textbook (DM Lane, Rice U)
- Introductory Statistics: Concepts, models and applications (DW Stockburger, Missouri State U, US Air Force Academy)
- Online Statistics: An Interactive Multimedia Course of Study (D Lane, Rice University)
- Statistics: The Study of Stability in Variation (UCLA on-line statistics textbook)
- StatPrimer (Version 6.2 - B. Burt Gerstman, San Jose State U)
- SURFSTAT Australia (The University of Newcastle - includes links, on-line introductory course, glossary and text materials)
- The Little Handbook of Statistical Practice (GE Dallal, Tufts)
American Statistical Association (ASA) Section on Statistics in Epidemiology (SIE)
AustVet Animal Health Svcs - Software - FreeCalc, Survey ToolBox, QCEL Laboratory Quality Controll Toolkit
Bayes:
- An intuitive explanation of Bayesian reasoning (E Yudkowsky)
- A technical explanation of technical explanation (E Yudkowsky)
- Bayesian Epidemiologic Screening Techniques - UC Davis
- Introductory Econometrics using Monte Carlo Simulation with Excel (book webpage)
- ISBA - International Society for Bayesian Analysis
- Lawrence Joseph: Bayesian sample size
- PropMisclassSampleSize - Bayesian sample size determination for prevalence and diagnostic studies in the absence of a gold standard
- on-line Bayes calculator
Bureau of Transportation Statistics - Statistical Policy and Research
- Guide to Good Statistical Practice in the Transportation Field, 2003 - TOC - pdf
- BTS Statistical Standards Manual, 2005 - TOC - pdf
- Guidelines of the Federal Statistical Organizations - Federal Register 67(107), June 4, 2002 pdf
categorical data:
- Categorical Data Analysis, 2nd ed website Agresti, A
- TableSim - A Program for Analysis of Small-Sample Categorical Data (manual NC-232, 2003 pdf)
diagnostic test evaluation:
- Bayesian Epidemiologic Screening Techniques - UC Davis
- International Meeting on the Design and Analyses of Diagnostic Test Evaluation Studies, 2006
EpiData Workshop - UC Berkeley School of Public Health
Exact-stats (mail list, archives, files) - JISCmail math & statistics lists
Excel:
- Excel Functions: an index
- Mathtools.net - link exchange for the Technical Computing Community
- U Kansas Technology Documentation - Excel
- Functions & Data Analysis Tools (Univ of Kansas, pdf)
- Using Excel for Statistics - Tips and Warnings - U Reading S
EHDP - Expert Health Data Programming, Inc.
- Epigram - Mortality Data Analysis System
- Birtha - Birth Data Analysis System
- PregData - Pregnancy Data Analysis System
- Links to US State Health Agencies
- Epidemiology Software Links
- Links Related to Large Health Data Sets
- Comparison of Interactive Mortality Data Analysis Systems
Interactive Statistical Pages
- JC Pezzullo, Georgetown U
- Free Statistical Software On-line ( tutorials, reviews)
- Web Pages that Perform Statistical Calculations!
- Rice Virtual Lab in Statistics (DM Lane)
- SISA (Simple Interactive Statistical Analysis) (D Uitenbroek - on-line analysis procedures)
- Statistics Calculators - Daniel Soper
- UCLA Dept of Statistics Calculators
- VassarStats: Web Site for Statistical Computation (R. Lowry, Vassar)
- Virtual Laboratory in Probability and Statistics (K Siegrist, U Alabama - explanation text & applets)
- Web Pages that Perform Statistical Calculations! (JC Pezzullo, Georgetown U)
Journal of Statistics Education - (on-line 93 - 00 archives)
http://www.amstat.org/publications/jse/toc.htmlLinux spreadsheets (Christopher Browne's Web Pages)
Math Archives: Topics in Mathematics (Links, static as of 2001)
Mathcad - MathSoft (MathCAD)
Mathtools.net: The technical computing portal for all your scientific and engineering needs (extensive lists)
modeling:
- Berkeley Madonna (software)
- Introduction to infectious disease modelling & its applications (course announcement)
NRCSE - National Research Center for Statistics and the Environment (U. Washington)
STRUTS: Statistical Rules of Thumb, 1998 - G van Belle pdf
Power and Precision (sample size software; downloadable demo version)
programming:
- official website
- tools
- wxGlade - GUI builder
- web
- papers:
- books:
- A Byte of Python (on-line download)
- Dive Into Python (on-line index & print - Amazon)
- How to Think Like a Computer Scientist: Learning with Python, 2nd (J Elkner, AB Downey, C Meyers - on-line index & print - Amazon)
- forums
Recursive Partitioning Resource Center
- Introduction to Programming with Resampling Stats and Statistics101 with Applications to Probability and Statistics (John Grosberg, pdf)
- Resampling: The New Statistics (on-line text, Julian Simon, 1997) - TOC
- The Philosophy and Practice of Resampling Statistics (Julian Simon) - TOC
- Resampling Statistics: Randomization and the Bootsrap (DC Howell, U Vermont)
Resources for Methods in Evaluation and Social Research
simulation:
- Dr. Mayes' Excel Files
- Excel Simulation - Mathtools.net
- Hethcote, HW UIowa Emeritus Prof
- pdf's of infectious disease modeling papers
- Introductory Econometrics using Monte Carlo Simulation with Excel (book webpage)
- Mathematical Modeling of Infectious Diseases - AL Lloyd, NCSU
- papers
- Modeling Infectious Disease in Humans and Animals, 2007 (book website)
- Monte Carlo analysis of the Copano Bay fecal coliform model
- Monte Carlo - Business Functions (free function library for excel)
- Monte Carlo Simulation for uncertainty analysis - downloads
- Monte Carlo methods - links
- Monte Carlo Simulation - Anthony's VBA Page
- Monte Carlo simulation in MS Excel (pdf)
- Monte Carlo Simulation Tutorial (Excel - partial free on-line)
- Resources on Monte Carlo Simulation
- SIMTOOLS - Excel add-ins - Roger Myerson, U Chicago
- SimulAr - Monte Carlo simulation in Excel
- Simulacion 4.0
- Spreadsheets as a Tool for Teaching Simulation (paper)
- Spreadsheets in Economics teaching (references)
- Stella Rodent Model
- Wilf, Herbert - UPenn
- wiki - Monte Carlo method
- On-line STATA resources
- Stata FAQs
- Stata List - archive
- User Group Meetings
- Stata Modules - Boston College Department of Economics
- RePEc Archive
- Stata - UCLA Academic Technology Services
- Stata Frequently Asked Questions
- Stata Learning Modules
- Stata Library Detailed Stata Web Pages
- Stata Programs for Data Analysis
Stata Textbook Examples- Stata examples and notes
- Stata basic commands (J Li, J Lee)
- An Introduction to Stata (E Peracchi, 75 pg pdf)
- Introduction to Stata (CF Baum, pdf)
- Longitudinal Data (A Hubbard, N Jewell, ppt ppt - class page)
- Programs and tutorials written by Stas Kolenikov
books:
- Hamilton, Lawrence C., prof of sociology, U New Hampshire
- Statistics with Stata series (ver. 9)
- Statistical Modeling for Biomedical Researchers (WD Dupont - Stata datasets, log and do files for book) - website
StatGraphics Internet Statistical Computing Center
Statistical Rules of Thumb - TOC
Statistics.Com (listing of statistical software, statistical short courses)
Statistics101 (Java program running "Resampling Stats" language
- Introduction to Programming with Resampling Stats and Statistics101 with Applications to Probability and Statistics (John Grosberg, pdf)
Statistix for Windows (Analytical Software - free trial download)
Statmodel - Mplus (Structural equation modeling) - discussion
STROBE: STrengthening the Reporting of OBservational studies in Epidemiology
SURV2: Relative Survival Analysis Program
UnifyPow (A SAS Module/Macro for Sample-Size Analysis, R O'Brien, Cleveland Clinic Foundation)
Washington Statistical Society - Methodology Seminars
WISE (Web Interface for Statistics Education - Claremont College)
class notes:
- COE 502: Introduction to Quantitative Methods (GV Glass, Arizona State University on-line statistics course with includes links to other materials)
- Logistic Regression (PA 765: Quantitative Research in Public Administration - NCSU)
people:
- Bretthorst, Larry
- Pezzullo, JC, Georgetown U
- Free Statistical Software On-line ( tutorials, reviews)
- Web Pages that Perform Statistical Calculations!
- Schield, Milo - Statistical Literacy (Augsburg College)
Wikipedia - Statistics
On-line Government Data Sources and Websites:
Animal Health in Australia
http://www.aahc.com.au/The National Animal Health Information System (NAHIS)
http://www.aahc.com.au/nahis/index.htmCenters for Disease Control and Prevention (CDC)
http://www.cdc.gov/
- CDC NCHS (National Center for Health Statistics) Fastats Index
http://www.cdc.gov/nchs/fastats/fastats.htm- CDC National Center for Health Statistics Mortality Data
http://www.cdc.gov/nchs/about/major/dvs/mortdata.htmCenter for Animal Health Monitoring (CAHM - USDA)
http://www.aphis.usda.gov/vs/ceah/cahm/Community Health Status Indicators Project (Health Resources and Services Admin, HHS)
http://www.communityhealth.hrsa.gov/FedStats (US Federal statistics contributed to site by federal agencies)
http://www.fedstats.gov/search.htmlFrench Sentinel System
http://www.b3e.jussieu.fr/sentiweb/en/sommaire.htmlHealth Canada Disease Surveillance On-Line
http://www.hc-sc.gc.ca/hpb/lcdc/webmap/index.htmlNational Institute of Standards Statistical Reference Datasets
http://www.nist.gov/itl/div898/strd/general/main.htmlNCI SEER (National Cancer Institute Surveillance, Epidemiology & End Results)
http://www-seer.ims.nci.nih.gov/NCI SRAB (Statistical Research and Applications Branch)
http://www-dccps.ims.nci.nih.gov/SRAB/PAHO - Pan American Health Organization
- EQUIDAD - Equity, Health & Human Development list serve
- PAHO Publications
Statistical Resources on the Web (University of Michigan Documents Center)
http://www.lib.umich.edu/govdocs/stats.htmlUK National Statistics
http://www.statistics.gov.uk/USDA
- USDA Center for Emerging Issues
http://www.aphis.usda.gov/vs/ceah/cei/index.htm- USDA Economics and Statistics System
http://usda.mannlib.cornell.edu/- USDA Economic Research Service
http://www.econ.ag.gov/- USDA National Agricultural Statistics Service
http://www.usda.gov/nass/US General Accounting Office (GAO - investigative arm of Congress)
http://www.gao.gov/WHO World Health Reports (annual)
http://www.who.int/whr/1999/en/whr95-98.htmWHO Statistical Information System
http://www.who.int/whosis/
On-Line or Downloadable Computer Programs:
Boston College Department of Economics Statistical Software Components (many downloadable STATA modules)
CLIVE (Computer-aided in Learning In Veterinary Education)
CMDT (Computational methods for diagnostic tests)
EPIDAT (Epidemiological Analysis of Tabulated Data - PAHO)
- general help (English) pdf
EpiData (data entry and documentation - Lauritsen, Bruus, Myatt)
- Field Guide wiki
- Example Cases
Epi-Info - CDC (Free software for data management and epidemiologic analysis)
EpiTools.Net (T Aragon, UC Berkeley)
- Applied Epidemiology Using R (T Aragn, W Enanoria)
EPIZOO: Software for use in Veterinary Public Health and Animal Disease Control (Vaclav Kouba)
Free Public Health Software (written by Mark Myatt)
EpiCalc 2000 Statistical calculator
FP Advisor Foodborne disease database
SampleXS Sample size calculator for cross-sectional surveys
SigmaD Standardization of measurement
SOUNDEX Calculators Confidentiality of data / identification of duplicate records
SampleLQ Sample size calculator for LQAS surveys
SampleRate Sample size calculator for a single rate
EpiGram Simple diagramming software
Statistical Utilities Statistical and epidemiological utilities (by Ray Simons)
EpiInfo Add-ins Logistic regression and survival analysis for EpiInfo .REC filesGraphROC for Windows: Tools for clinical test evaluation
Interactive Statistical Pages
- Calculators On-Line Center - Martindale's The Reference Desk
- Fearn's McNemar's Paired Sample Test Sample Size and Power
http://www.fearn.com/McNemars.htm- Fisher's Exact Test
http://infofarm.affrc.go.jp/~kadosawa/fishertest.htm- Freedom from Disease Probability Calculator
http://www.ausvet.com.au/surveillance/freedom.htm- Interactive Statistical Pages -- Part 2 (JC Pezzullo, Georgetown U - tutorials, free software, reviews)
http://members.aol.com/johnp71/javasta2.html- Java Applets
http://www.stat.duke.edu/sites/java.html- SISA (Simple Interactive Statistical Analysis) (D Uitenbroek - on-line analysis procedures)
http://home.clara.net/sisa/index.htm- The number needed to treat: a clinically useful nomogram in its proper context (includes Java applet)
http://www.hbroussais.fr/Broussais/InforMed/Nomogram/Nomo.html- Web Pages that Perform Statistical Calculations! (JC Pezzullo, StatPages.net, Georgetown U)
http://members.aol.com/johnp71/javastat.htmlLawrence Joseph: Bayesian sample size software
MedCalc 3000 (on-line medical calculations)
http://calc.med.edu/Medical College of Wisconsin Online Clinical Calculators
- Bayesian Calculator (Pr, Se, Sp, TP, TN, FP)
NetEpi: Free, open source, network-enabled tools for epidemiology and public health practice (Tim Churches)
http://www.netepi.org/OpenEpi - Open Source Epidemiologic Statistics for Public Health (Emory U Rollins School of Public Health)
PEPI : Statistical Programs For Epidemiologists (JH Abramson, Hebrew Univ)
http://www.sagebrushpress.com/pepibook.html (current v. 4.0)
http://www.usd-inc.com/pepi.html (old v. 3.0)PEPI-for-Windows (WINPEPI) - Brixton Health
Prophet Software
http://www-prophet.bbn.com/Northwestern University FTP Site: ftp://ftp.basic.nwu.edu/Prophet/ftp_this/
PS: Power and Sample Size (Dupont and Plummer, Vanderbilt)
Public Domain Software for Epidemiological Analysis - DOS and Windows (UCLA School of Public Health)
http://www.ph.ucla.edu/epi/software.htmlR
- Applied Epidemiology Using R (T Agragon, W Enanoria)
- R Project for Statistical Computing (freeware language and environment for statistical computing and graphics that is similar to S)
- Comprehensive R Archive Network
- R FAQ
- Rweb - statistical analysis on the web (web-based interface)
Resampling Stats (trial version on-line)
http://www.resample.com/ROC Analysis (software; Ben Herman, University of Chicago)
http://www-radiology.uchicago.edu/krl/toppage11.htmNine downloadable programs for ROC analysis
Russ Lenth's Power and Sample-size Page (U. of Iowa, Excel add-in, Java applets)
http://www.stat.uiowa.edu/~rlenth/Power/index.htmlSEER*Stat 2.0 (SEER Scientific Systems - National Cancer Institute)
http://seer.cancer.gov/ScientificSystems/StatPages.net (JC Pezzullo, Georgetown U)
Free Statistical Software
http://members.aol.com/johnp71/javasta2.htmlSURV2: Software for Relative Survival Analysis
http://www.cancerregistry.fi/surv2/Survey Toolbox (software for planning, conducting and analyzing animal health surveys)
UML - Unified Modeling Language
http://www.ausvet.com.au/surveillance/toolbox.htm
- BOUML
- Dia - GNOME
- Java-Source.net
- My Little UML (Tools) Page
- UML Overview
- UML Tools
- UML2 - UMLet
- wiki
Vanderbilt Medical Center
ABSRISK: Absolute & Relative Risk freeware (WD Dupont, WD Plummer)
http://www.mc.vanderbilt.edu/prevmed/absrisk.htmPS: Power and Sample Size freeware (WD Dupont, WD Plummer)
http://www.mc.vanderbilt.edu/prevmed/ps.htmW3MCSim
Win-SSize (KC Lun, Nat Univ Singapore, sample size, statistical power estimation - Beta test site)
http://www.health1.nus.edu.sg/winssize/ - (link dead 8/23/01)Zhang, H (Yale Univ. - software)
http://peace.med.yale.edu/pub/
The World-Wide Web Virtual Library:
- Biostatistics
http://www.biostat.washington.edu/Xvlib/- Epidemiology (huge list of epidemiology resources and sites on the Internet)
http://www.epibiostat.ucsf.edu/epidem/epidem.html- Evaluation of information sources
http://www.vuw.ac.nz/~agsmith/evaln/evaln.htm- Statistics
http://www.stat.ufl.edu/vlib/statistics.htmlHardin MetaDirectory of Internet Health Resources (U Iowa)
http://www.lib.uiowa.edu/hardin/md/index.htmlInternational Medical Libraries on the Web (web ring)
http://www.webring.org/cgi-bin/webring?ring=medlibring&listThe James Lind Library: Illustrating the development of fair tests of treatments in health care
- Chalmers I. Archie Cochrane (1909-1988)
- Petrosino, A. Charles Frederick [Fred] Mosteller (1916-2006)
Martindale's The Reference Desk
THE "VIRTUAL" - PUBLIC HEALTH CENTER
http://www-sci.lib.uci.edu/HSG/PHealth.htmlA History of Public Health in South Carolina (M Learner, S Carolina Dept of Health and Environmental Control)
http://www.scdhec.net/co/elsa/publichealth/American Medical Association
Finding and assembling the best Evidence
http://www.ama-assn.org/sci-pubs/amnews/net_98/nwkg0420.htmExtended reference to the concepts and resources
http://www.ama-assn.org/sci-pubs/amnews/net_98/nref0420.htmDiffusion of Information in Medical Care
http://www.ama-assn.org/sci-pubs/amnews/net_98/phelps.htmAnatomy of an Epidemic
http://library.advanced.org/11170/An Inventory of Knowledge and Skills Relating to Disease Prevention and Health Promotion
http://views.vcu.edu/commed/ATPM-MDComptencies.htmlAPHA - American Public Health Association
- List of Schools of Public Health
ARCUS Quickstat (Biomedical statistics - downloadable trial version)
http://www.camcode.com/Artica (an interactive epidemiologic investigation for k-12)
http://www.gene.com/ae/mystery/Association of Teachers of Preventive Medicine
http://www.atpm.org/Association of Teachers of Veterinary Public Health and Preventive Medicine
http://www.cvm.uiuc.edu/atvphpm/
- Model Veterinary Public Health / Preventive Medicine Curriculum
http://www.cvm.uiuc.edu/atvphpm/Files/vetcurriculum.pdf- Software and On-Line Resources
http://www.cvm.uiuc.edu/atvphpm/Software.htmlBetty C. Jung's Web site (public health - huge)
http://www.bettycjung.net/Bibliografia sulla qualit delle informazioni mediche (English bibliography on the quality of internet medical materials)
http://www.irfmn.mnegri.it/oncocare/it/qualita.htmBibliography on Evaluating Internet Resources (Nicole Auer, Virginia Polytechnic and State University)
http://www.lib.vt.edu/research/libinst/evalbiblio.htmlBruce Weaver's Links (Clinical Epidemiology and Biostatistics, McMaster Univ)
http://www.angelfire.com/wv/bwhomedir/Cattle Disease Diagnostic System (CaDDiS) (Veterinary Informatics & Epidemiology, University of Strathclyde and University of Glasgow)
http://www.dis.strath.ac.uk/vie/CaDDiS (Interactive CaDDiS model)
http://www.dis.strath.ac.uk/vie/CaDDiS/docs/Home_Page.html (CaDDiS Home Page)Causality (C R Shalizi, U Michigan Center for the Study of Complex Systems)
http://cscs.umich.edu/~crshalizi/notebooks/causality.htmlCDC On-line Presentations
http://www.cdc.gov/genetics/resources/online.htmEXCITE (CDC Excellence in Curriculum Integration through Teaching Epidemiology - Epidemiology training materials for K-12)
http://www.cdc.gov/excite/index.htmCEPH (Council on Education for Public Health - accrediting body)
http://www.ceph.org/Comparison of Interactive Mortality Data Analysis Systems
http://www.ehdp.com/epigram/compare1.htmComplex Systems in Biology (M. Chicurel, tools and centers for understanding complex biological systems, BioMedNet #38)
http://biomednet.com/hmsbeagle/38/webres/insitu.htm (requires site login and password (free))Cognitive Function and Decision making
- Changing Minds
http://changingminds.org/index.htm- Psych Central - List of cognitive biases
- Wikipedia - list of cognitive biases
DefendingScience.Org (Project on Scientific Knowledge and Public Policy (SKAPP): application of scientific evidence in the legal and regulatory arenas)
http://www.defendingscience.org/
- American Journal of Public Health Supplement: Scientific Evidence and Public Policy (Vol 95, S1, July 2005) (toc - subscription required)
Delta Omega Public Health Honorary Society Classics (PDF texts by John Snow, Florence Nightengale and others)
http://www.deltaomega.org/classics.htmEd Rigdon's SEM FAQ (structural equation modeling)
http://www.gsu.edu/~mkteer/semfaq.htmlEmergency Medicine on the Web ( National Center for Emergency Medicine Informatics - includes on-line clinical calculators)
http://www.ncemi.org/Epidemiology for Journalists: Briefing Papers for Journalists (D. Wartenberg, Univ. of Medicine and Dentistry of New Jersey)
Epidemio-L (list for methodological issues in epidemiology)
Archives through 12/99 and subscription information
http://cooke.gsf.de/wjst/projects/epidemio-l/main.cfmEpidemiology Resources
http://vein.library.usyd.edu.au/links/epidemiology.htmlEpiMonitor (Epidemiology Monitor)
http://www.epimonitor.net/Evaluating Drug Literature Actively (slide series, Paul Cuddy)
http://cctr.umkc.edu/user/cuddy/druglit/index.htmEvaluating Internet Research Sources (Robert Harris, Vanguard Univ)
http://www.sccu.edu/faculty/R_Harris/evalu8it.htmEvidence Based Medicine: Finding the Best Clinical Literature (U Illinois)
http://www.uic.edu/depts/lib/health/ebm.htmlFramework for and assessment of the weight of evidence in the relationship of exposure to moulds in indoor settings and human health effects - Appendix 1
http://www.mcmaster.ca/mieh/mapp.htmFree Medical Journals .com
http://www.freemedicaljournals.com/Grading System for Recommendations in Evidence-Based Clinical Guidelines (Scotland - PDF)
http://www.nzgg.org.nz/tools/Grading System for Recommendations - Review Report.pdfGuidelines for Good Epidemiology Practices
http://www.hsph.harvard.edu/Organizations/DDIL/gep.htmlHow to do Research (advice, links - I. Kennedy)
http://www.geocities.com/Athens/3238/How to do research (advice - Paul Hutchinson)
http://www.angelfire.com/biz/rumsby/ARES.htmlHow to do research (links - S Miksch)
http://www.ifs.tuwien.ac.at/~silvia/research-tips/How to Read a Clinical Journal (New York Medical College)
http://www.complab.nymc.edu/Medicine/ReadJournal.htmHow to study statistics (advice - Paul Hutchinson)
http://www.angelfire.com/biz/rumsby/ASTUDY.htmlHCRA - Harvard Center for Risk Analysis
Injury Control Resource Information Network
http://www.injurycontrol.com/icrin/Instructions to Authors in the Health Sciences (RH Mulford Library, Medical College of Ohio)
http://www.mco.edu/lib/instr/libinsta.htmlInternational Food Information Council (IFIC)
- Improving Public Understanding: Guidelines For Communicating Emerging Science on Nutrition, Food Safety, and Health
http://ific.org/proactive/newsroom/release.vtml?id=17560- IFIC Review: How to Understand and Interpret Food and Health-Related Scientific Studies
http://ific.org/proactive/newsroom/release.vtml?id=17953- Glossary (mostly food terminology but includes some study terminology)
http://ific.org/glossary/International Animal Health Code - 1999 Edition
http://www.oie.int/Norms/MCode/A_summry.htmIntroduction to Clinical Reasoning Home Page (Medical University of South Carolina)
http://www.musc.edu/muscid/icrhomepage.html
- Evidence Based Medicine Concepts
http://www.musc.edu/muscid/ebmconcepts.html- Evidence Based Medicine Glossary
http://www.musc.edu/muscid/glossary.htmlKnowledge Management in Health Services (on-line course - L. Larson, Univ. Wash)
http://courses.washington.edu/~hs590a/hs590a.htmlMedical Education On-line (on-line journal and resources)
http://www.Med-Ed-Online.org/Resource section http://www.Med-Ed-Online.org/resource.htm#resource
- ORINTA: A Small Software Program to Learn Risk Ratio and Odds Ratio in an Elementary Course of Epidemiology
- An interactive lecture about the logistic function as a tool for assessing risk
- Measurement of Risk in Epidemiology (minicourse)
- Statistical Power Calculator
- Interrater Reliability Calculator
- STAT*WRITER (electronic pearl-book for class notes and factoids of medical training)
Institute of Medicine Report on Medical Mistakes - press
http://www.uhmc.sunysb.edu/prevmed/mns/mcs/1/sched/news.htmlLinks2Go: Probability and Statistics
http://www.links2go.com/topic/Probability_and_StatisticsNational Center for Reliable Health Information (formerly National Council Against Health Fraud)
http://www.ncahf.org/The Alt Med Advisory Page - NCRHI Veterinary Task Force (links to materials)
http://www.seanet.com/~vettf/National Public Health Partnership
http://www.dhs.vic.gov.au/nphp/index.htm
- A Proposed Schema for Evaluating Evidence on Public Health Interventions
http://www.dhs.vic.gov.au/nphp/ppi/evidence/isspaper/index.htm- A Proposed Schema for Evaluating Evidence on Public Health Interventions (Version 3.1) July 2001 (PDF file, 508k)
http://www.dhs.vic.gov.au/nphp/ppi/evidence/schema/schema.pdfNews & Numbers (Victor Cohn, Washington Post science editor - Reporting Tools for reporters)
http://www.facsnet.org/report_tools/news_numbers/main.html (dead link)Outbreak (Outbreak is an on-line information service addressing emerging human diseases.)
http://www.outbreak.org/cgi-unreg/dynaserve.exe/index.htmlOutcomes from Observational Studies: Understanding causal ambiguity
http://www.diahome.org/abstract/dij1262.pdfOverview of Computer Intensive Statistical Inference Procedures (P A Kelly)
http://garnet.acns.fsu.edu/~pkelly/resampling.htmlPitfalls of Data Analysis (or How to Avoid Lies and Damned Lies) (C Helberg)
http://www.execpc.com/~helberg/pitfalls/
http://www.vims.edu/~david/pitfalls/pitfalls.htmPreventive Veterinary Medicine (searchable journal website with links to all abstracts since March, 1992)
http://www.elsevier.nl/locate/prevetmedProMED (Program for Monitoring Emerging Diseases - listserver and other information)
http://www.promedmail.org:/pls/promed/promed.homePostings for the current month
http://www.promedmail.org/pls/promed/promed.searchhtml.pmedtoday(Old) http://www.promedmail.org:8080/promed/promed.folder.home
http://www.fas.org/promed/Quackwatch: Your Guide to Health Fraud, Quackery, and Intelligent Decisions (Stephen Barrett, M.D., medical editor, Prometheus Books)
http://www.quackwatch.com/Ralph R. Frerichs (UCLA School of Public Health)
http://www.ph.ucla.edu/epi/faculty/frerichs.html
- Epidemiologic Information on Bioterrorism
http://www.ph.ucla.edu/epi/bioter/bioterrorism.html- John Snow Website
http://www.ph.ucla.edu/epi/snow.htmlReferences about the quality of medical information (Links to on-line sources)
http://www.irfmn.mnegri.it/oncocare/it/qualita.htmReporting on Risk: A Journalist's Handbook on Environmental Risk Assessment
http://www.facsnet.org/report_tools/guides_primers/risk/main.html (dead link)Senn, Stephen
http://www.senns.demon.co.uk/Consult.htm
- Cross-over Trials in Clinical Research - Programs
http://www.senns.demon.co.uk/CTiCR/CTICR2Programs.htm- Statistical Links
http://www.senns.demon.co.uk/pharmsts.htmStatistics and Statistical Graphics Resources (Michael Friendly, York University)
http://www.math.yorku.ca/SCS/StatResource.htmlStatistics.Com (extensive links to software, databases)
http://www.statistics.com/Statistics Newsgroups Search Function
http://statistics.com/newsearch.htmlStatistics Education - Online Statistical teaching materials (Juha Puranen, Univ. Helsinki)
http://www.helsinki.fi/~jpuranen/links.htmlStatistics on the Web (Clay Helberg)
http://www.execpc.com/~helberg/statistics.htmlStatistics Resources on the Web
http://www.stats.gla.ac.uk/ltsn/links_stats.html (new)
http://www.stats.gla.ac.uk/cti/links_stats/index.html (old)Student Guides and Student Tools (Tim Menzies)
http://www.cse.unsw.edu.au/~timm/pub/guides/guides.htmlHow to read a research paper (Tim Menzies)
http://www.cse.unsw.edu.au/~timm/pub/guides/reading.htmlSupporting Evidence-based Practice in Critical Care (A. Randolph, Harvard)
http://www.intensivecare.com/Task Force for Veterinary Science
Teaching Inference about Proportions Using Bayes and Discrete Models
http://www.amstat.org/publications/jse/v3n3/albert.htmlUNC-CH Academic Technology and Networks Software Documentation (student instruction sheets)
http://help.unc.edu/documentation/Microsoft Software Documentation
http://help.unc.edu/cgi-bin/getindex?doctype=Desktop&platform=Windows&type=htmlUniversity of Cambridge Public Health Page
http://fester.his.path.cam.ac.uk/phealth/phweb.htmlUniversity of Texas Statistical Services FAQ
http://www.utexas.edu/cc/faqs/stat/US Federal Judicial Center Reference Manual on Scientific Evidence (for Federal Judges - downloadable sections)
Reference Guide on Epidemiology
Reference Guide on Toxicology
Reference Guide on Survey Research
Reference Guide on Statistics
Reference Guide on Multiple RegressionVeterinary Public Health - WHO (S Broll, Hannover)
http://www.veterinary-public-health.de/home_e/inhalt_e/frameset_e.htmWorkshop on Epidemiologic Methods and Approaches for Food Safety (Oct. 18-19, 2000)
http://vbms.unl.edu/wills/Epiconf/toc.pdfWorld Bank Public Health Surveillance Toolkit
http://survtoolkit.worldbank.org/Ulcer story:
Barry J. Marshall, J. Robin Warren - Nobel Price 2005
CDC site
Wikipedia - John Lykoudis
Humor:
Blogs and other evolving sources:
Blogs:Listservs
- Aetiology (Tara C. Smith)
- BarfBlog: Musings from the international food safety network
- Effect Measure
- Epidemiologic Inquiry
- Framing Science
- Health Mongers
- journalClub
- Medical News Feeds
- medpundit
- Respectful Insolence
- Statistical Modeling, Causal Inference, and Social Science
Wikipedia:
Page URL: http://www.vetmed.wsu.edu/courses-jmgay/epilinks.htm