Publications from the Call Lab
(updated Feb 2008)
2008
Call,
DR and P Plescia. In press.
Identifying sources of fecal pollution in the
Colville
River using
library-independent genetic markers. Northwest Science
Khachatryan, AR,
TE Besser, and DR Call.
In press.
The SSuT antimicrobial resistance element form calf-adapted
Escherichia coli is widely distributed
in Washington
State cattle. Applied and
Environmental Microbiology 74:391-395.
Leach, MD, SL Broschat, and DR Call.
In press. A discrete, stochastic model and correction method for bacterial
source tracking. Environmental Science and Technology.
2007
Bae, W, DD Hancock, DR Call,
YH Park, ACB Berge, RM Finger, WF Sischo, and TE Besser. 2007. Dissemination of
antimicrobial resistant strains of
Campylobacter coli and Campylobacter
jejuni among cattle in Washington State
and California.
Veterinary Microbiology 122:306-315.
Call, DR, DM
Satterwhite, and M Soule. 2007. Using DNA suspension arrays to identify
library-independent markers for bacterial source tracking. Water Research
41:3740-3746.
Daniels, JB, DR Call, and TE Besser. Accepted. Molecular epidemiology of
blaCMY-2 plasmids carried by
Salmonella enterica and
Escherichia coli isolated from cattle in the Pacific
Northwest. Applied and Environmental Microbiology.
Davis MA,
DD Hancock, TE Besser, JB Daniels, K Baker and DR Call. 2007. Antimicrobial
resistance in Salmonella
enterica serovar Dublin isolates from beef and dairy sources.
Veterinary Microbiology 119:221-230.
Davis, MA,
TE. Besser, K Eckmann, K McDonald, D Greene, DD Hancock, K.N.K. Baker, and DR
Call. 2007. Emerging multi-drug resistant strain of
Salmonella enterica serovar
Typhimurium in cattle in the Pacific Northwest United States. Emerging
Infectious Diseases 13:1583-1586.
Kang,
MS,
TE Besser, DD Hancock, and DR Call. 2007.
Multiple environmental stress tests show no common phenotypes shared amongst
contemporary epidemic strains of
Salmonella enterica. Applied and Environmental Microbiology
72:6938-6947.
LaFrentz, BR, NM Lindstrom, SE LaPatra, DR Call, and KD Cain. 2007.
Electrophoretic and Western blot analysis of the lipopolysaccharide and
glycocalyx of Flavobacterium psychrophilum.
Fish and Shellfish Immunology 23:770-780.
Ramsrud, AL,
SA LaFrentz, BR LaFrentz, KD Cain, and DR Call. 2007. Differentiating 16S rRNA
alleles of Flavobacterium
psychrophilum using a simple PCR
assay. Journal of Fish Diseases 30:175-180.
Sudheesh, PS, BR LaFrentz, DR Call, WF Siems, SE LaPatra, GD Wiens, and KD Cain.
2007. Identification of potential vaccine target antigens by immunoproteomic
analysis of a virulent and a non-virulent strain of the fish pathogen
Flavobacterium
psychrophilum.
Diseases of Aquatic Organisms 74:37-47.
Wan, Y, SL Broschat, and DR Call. 2007. Validation of mixed-genome microarrays
as a method for genetic discrimination. Applied and Environmental Microbiology
73:1425-1432.
Zhou, X, J Elmose, and DR Call. 2007. Interactions between the environmental
pathogen Listeria
monocytogenes and a free-living
protozoan (Acanthamoeba
castellanii). Environmental
Microbiology 9:913-922.
2006
Call, DR, MS Kang, J Daniels, and TE Besser. 2006. Assessing genetic
diversity in plasmids from Escherichia coli and
Salmonella enterica using a mixed-plasmid microarray. Journal of
Applied Microbiology 100:15-28.
<Abstract>
Kang, MS, TE Besser, and DR Call. 2006. Variability in the region downstream
of the blaCMY-2 β-Lactamase Gene in
Escherichia coli and Salmonella enterica plasmids.
Antimicrobial Agents and Chemotherapy 50:1590-1593.
<Abstract>
Kang, MS, TE Besser, DD Hancock, S Porwollik, M McClelland, and DR Call.
2006. Identification of specific gene sequences conserved in contemporary
epidemic strains of Salmonella enterica. Applied and Environmental
Microbiology 72:6938-6947
Khachatryan, AR, DD Hancock, TE Besser, and DR Call. 2006. Antimicrobial drug
resistance genes do not convey secondary fitness advantage in calf-adapted
Escherichia coli. Applied and Environmental Microbiology 72:443-448.
<Abstract>
Khachatryan, AR, TE Besser, DD Hancock, and DR Call. 2006. Use of a
nonmedicated dietary supplement correlates with increased prevalence of
streptomycin-sulfa-tetracycline-resistant
Escherichia coli on a dairy farm. Applied and Environmental
Microbiology 72:4583-4588.
<Abstract>
Raymond, M, R Wohrle, and DR Call. 2006. Assessment and promotion of
judicious antibiotic use on dairy farms in Washington State. Journal of Dairy
Science 89:3228-3240.
<Abstract>
Soule, M, EA Kuhn, F Loge, J Gay, and DR Call. 2006. Using DNA microarrays to
identify library-independent markers for bacterial source tracking. Applied and
Environmental Microbiology 72:1843-1851.
<Abstract>
2005
Bae, W, KN Kaya, DD Hancock, DR Call, YH Park, and TE Besser. 2005.
Prevalence and antimicrobial resistance of thermophilic Campylobacter sp.
from cattle farms in the Northwestern United States. Applied and Environmental
Microbiology 71:169-174.
<Abstract>
Borucki, MK, CC Gay, J Reynolds, KL McElwain, SH Kim, DR Call, DP Knowles.
2005. Genetic diversity of Listeria monocytogenes strains from a
high-prevalence dairy farm. Applied and Environmental Microbiology 71:5893-5899.
Borucki, MK, J Reynolds, DR Call, T Ward, B Page, and J Kadushin. 2005.
Suspension arrays for direct and high throughput subtyping of Listeria
monocytogenes from genomic DNA. Journal of Clinical Microbiology
43:3255-3259.
Broschat, SL, FJ Loge, JD Peppin, D White, DR Call, and E Kuhn. 2005. Optical
reflectance assay for the detection of biofilm formation. Journal of Biomedical
Optics 10:44027.
Broschat SL, DR Call, EA Kuhn, and FJ Loge. 2005. Comparison of the
reflectance and crystal violet assays for measurement of biofilm formation by
Enterococcus. Biofilms 2:177-181.
Call, DR. 2005. Challenges and opportunities for pathogen detection using DNA
microarrays. Critical Reviews in Microbiology 31:91-99.
Skinner, DZ, PA Okubara, KH Baek, and DR Call. 2005. Long oligonucleotide
microarrays in wheat: evaluation of hybridization signal amplification and an
oligonucleotide-design computer script. Functional and Integrative Genomics
5:70-79.
Soule, M, K. Cain, S. LaFrentz, and DR Call. 2005. Combining suppression
subtractive hybridization and microarrays to map the intraspecies phylogeny of
Flavobacterium psychrophilum. Infection and Immunity 73:3799-3802.
Soule, M, S LaFrentz, K Cain, S LaPatra, and DR Call. 2005.
Polymorphisms in 16s rRNA genes of Flavobacterium
psychrophilum correlate with elastin hydrolysis and tetracycline
resistance. Diseases of Aquatic Organisms 65:209-216.
2004
Borucki, MK, SH Kim, DR Call, SC Smole, and F. Pagotto. 2004. Selective
discrimination of Listeria monocytogenes epidemic strains by a
mixed-genome DNA microarray compared to discriminatin by pulsed-field gel
electrophoresis, ribotyping, and multilocus sequence typing. Journal of Clinical
Microbiology 42:5270-5276
Cobbold, RN, DH Rice, M Szymanski, DR Call, and DD Hancock. 2004. Comparison
of shiga-toxigenic Escherichia
coli (STEC) prevalence between dairy, feedlot and cow-calf herds in
Washington State. Applied and Environmental Microbiology 70:4375-4378.
González, SF, MJ Krug, ME Nielson, Y. Santos, and DR Call. 2004. Simultaneous
detection of marine fish pathogens using multiplexed PCR and DNA microarrays.
Journal of Clinical Microbiology 42:1414-1419.
Khachatryan, AR, DD Hancock, TE Besser, and DR Call. 2004. The role of
calf-adapted Escherichia coli in maintenance of antibiotic
resistance in dairy calves. Applied and Environmental Microbiology 70:752-757.
<Abstract>
Lahmers, S, Y Wu, DR Call, S. Labeit, and H. Granzier. 2004. Developmental
control of titin isoform expression and passive stiffness in fetal and neonatal
myocardium. Circulation Research 94:505-513.
Lane, S., J. Evermann, F. Loge and D.R. Call.
In press. Secondary structure prevents target hybridization to
oligonucleotide microarrays. Biosensors and Bioelectronics.
Panicker, G, DR Call, MJ Krug, and AK Bej.
Accepted. Detection of pathogenic Vibrio spp. in shellfish and Gulf
of Mexico water using multiplex PCR and DNA-array hybridization. Applied and
Environmental Microbiology.
Straub, TM, Quinoñez Díaz, MD, CO Valdez, DR Call, and DP Chandler. 2004.
Using DNA microarrays to detect multiple pathogen threats in water. Water
Science and Technology: Water Supply 4:107-114.
Warsen, A, MJ Krug, S LaFrentz, DR Stanek, FJ Loge, and DR Call. 2004.
Simultaneous discrimination between 15 fish pathogens using 16S rDNA PCR and DNA
microarrays. Applied and Environmental Microbiology 70:4216-4221.
Willse, A, TM Straub, S. Wunschel, JA Small, DR Call, D Daly, and DP
Chandler. 2004. Quantitative oligonucleotide microarray fingerprinting of
closely related Salmonella enterica isolates. Nucleic Acid Research
32:1848-1856.
Woodford, NL, DR Call, DG Remick, and R Rochford. 2004. A model of
angiogenesis in SCID mice xenoengrafted with Epstein-Barr virus transformed B
cells. Comparative Medicine 54:209-215.
2003
Borucki MK, MJ Krug, WT Muraoka, and DR Call. 2003. Genetic characterization
of Listeria
monocytogenes using DNA microarrays. Veterinary Microbiology 92:351-362.
Borucki, M, and DR Call. 2003. Listeria
monocytogenes serotype identification using PCR. Journal of Clinical
Microbiology 41:5537-5540.
Borucki, MK, JD Peppin, D White, F Loge and DR Call. 2003. Variation in
biofilm formation among strains of Listeria
monocytogenes. Applied and Environmental Microbiology 69:7336-7342.
Call, DR, MK Borucki and FJ Loge. 2003. Detection of bacterial pathogens in
environmental samples using DNA microarrays. Journal of Microbiological Methods
53:235-243.
Call, DR, MK Borucki, and TE Besser. 2003. Mixed-genome microarrays reveal
multiple serotype and lineage-specific differences for Listeria
monocytogenes. Journal of Clinical Microbiology 41:632-639.
Call, DR, MK Bakko, MJ Krug, and MC Roberts. 2003. Identifying antimicrobial
resistance genes using DNA microarrays. Antimicrobial Agents and Chemotherapy
47:3290-3295.
Davis, MA, DR Call, TE Besser and DD Hancock. 2003. Evaluation of pulsed
field gel electrophoresis as a measure of relatedness between strains of
Escherichia coli
O157:H7. Journal of Clinical Microbiology 41:1843-1849.
Davis, MA, DD Hancock, DH Rice, DR Call, R DiGiamcomo, M Samadpour, and TE
Besser. 2003. Feedstuffs as a vehicle of cattle exposure to Escherichia
coli O157:H7 and Salmonella
enterica. Veterinary Microbiology 95:199-210.
Davis, MA, DD Hancock, TE Besser, DH Rice, CJ Hovde, R. DiGiacomo, M.
Samadpour, and DR Call. 2003. Correlation between geographic distance and
genetic similarity in an international collection of bovine feacal
Escherichia coli
O157:H7 isolates. Epidemiology and Infection 131:923-930.
2002
Davis WC, RL Konzek, K Haas, DM Estes, MJ Hamilton, DR Call, V Apostolopoulos,
and IF McKenzie. 2002. Use of the mannan receptor to selectively target vaccine
antigens for processing and antigen presentation through the MHC Class I and
Class II pathways. Annals of the New York Academy of Sciences 969:119-125.
Kingsley, MT, TM Straub, DR Call, SC Wunschel, DS Daly and DP Chandler. 2002.
Fingerprinting closely related Xanthamonas pathovars with random nonamer
oligonucleotide microarrays. Applied and Environmental Microbiology
68:6361-6370.
Loge, FJ, DE Thompson, and DR Call. 2002. PCR detection of specific pathogens
in water: A risk-based analysis. Environmental Science and Technology
35:2754-2759.
Wang X, SJ Ebong, DR Call, DE Newcomb, GR Bolgos, and DG Remick. 2002.
Calcitonin gene-related peptide partially reverses decreased production of
chemokines KC and MIP-2 following murine sepsis. Inflammation 26:167-174.
2001
Call, DR, FJ Brockman, and DP Chandler. 2001. Detecting and genotyping
Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays.
International Journal of Food Microbiology 67:71-80.
Call, DR, DP Chandler, and FJ Brockman. 2001. Fabrication of DNA microarrays
using unmodified oligomer probes. BioTechniques 30:368-379.
Call DR, Nemzek JA, Ebong SJ, Bolgos GR, Newcomb DE, Wollenberg GK and Remick
DG. 2001. Differential local and systemic regulation of the murine chemokines KC
and MIP2. SHOCK 4:278-284.
Call, DR, JA Nemzek, SJ Ebong, GR Bolgos, DE Newcomb, and DG Remick. 2001.
Ratio of local to systemic chemokine concentrations regulates neutrophil
recruitment. American Journal of Pathology 158:715-721.
Chandler, DP, J Brown, DR Call, JW Grate, DA Holman, L Olson, MS Stottlmyre,
and CJ Bruckner-Lea. 2001. Continuous, automated immunomagnetic separation and
microarray detection of E. coli O157:H7 from poultry rinsate.
International Journal of Food Microbiology 70:143-154.
Remick, DG, LB Green, DE Newcomb, SJ Garg, GL Bolgos, and DR Call. 2001. CXC
Chemokine redundancy ensures local neutrophil recruitment during acute
inflammation. American Journal of Pathology 159:1149-1157.
Remick DG, DR Call, SJ Ebong, DE Newcomb, P Nybom, JA Nemzek, GE Bolgos.
2001. Combination immunotherapy with soluble tumor necrosis factor receptors
plus interleukin 1 receptor antagonist decreases sepsis mortality. Critical Care
Medicine 29:473-481.
Small, JA, DR Call, FJ Brockman, TM Straub, and DP Chandler. 2001. Direct
detection of 16S rRNA in soil extracts using oligonucleotide microarrays.
Applied and Environmental Microbiology 67:4708-4716.
2000
Call, DR, M Jacoby, K Rudolf, G Bolgos, C Robbins, and DG Remick. 2000.
Detecting wildlife orthologues for tumor necrosis factor (TNFa) and
interleukin-6 (IL‑6). Northwest Science 74:340:345.
Nemzek, JA, DR Call, SJ Ebong, GR Bolgos, DE Newcomb and DG Remick. 2000.
Immunopathology of a 2 hit model of pulmonary injury. American Journal of
Physiology. Lung Cellular and Molecular Physiology 278:L512-L520.
Remick, DG, DE Newcomb, GL Bolgos, and DR Call. 2000. Comparison of the
mortality and inflammatory response of two models of sepsis: lipopolysaccharide
vs. cecal ligation and puncture. SHOCK 13:110-116.
1999
Ebong S, DR Call, G Bolgos, DE Newcomb, J Granger, M O’Reilly, and DG Remick.
1999. Immunopathologic alterations in non-lethal sepsis. SHOCK 12: 118-126.
Ebong, S, D Call, G Bolgos, J Nemzek and D Remick. 1999. Immunopathologic
alterations in murine sepsis models of increasing lethality. Infection and
Immunity 67:6603-6610.
Granger, J, M O’Reilly, DR Call, S Ebong, A Taur, B Williams, M Nauss, J
Millican and DG Remick. 1999. A sandwich ELISA for measurement of picogram
quantities of murine granulocyte colony stimulating factor. Journal of
Immunological Methods 225:145-156.
Nemzek, JA, D Newcomb, DR Call, and DG Remick. 1999. Optimization of
enzyme-linked immunosorbant assays using commercially matched antibody pairs:
removal of plasma inhibition. Immunological Investigations 28:209-221.
Pre-1999
Call, DR, RJ Gutiérrez and J Verner. 1992. Habitat use and home-range size of
California Spotted Owls in the Sierra Nevada. Condor 94:880-888.
Call, DR, JG Hallett, SG Mech, and M Evans. 1998. Considerations for
measuring genetic variation and population structure with multilocus
fingerprinting. Molecular Ecology 7:1337-1346.
Call, DR and JG Hallett. 1998. PCR primers for microsatellite loci in the
anurans Rana luteiventris
and Hyla regilla. Molecular Ecology 7:1085-1087.
Call, DR and DG Remick. 1998. Low molecular weight heparin is associated with
greater cytokine production in a stimulated whole blood model. SHOCK 10:192-197.
LaHaye, WS, RJ Gutiérrez, and DR Call. 1997. Nest-site selection and
reproductive success of California Spotted Owls. Wilson Bulletin 109:42-51.
Last Edited: Feb 14, 2008 7:59 AM
